Difference between revisions of "Kyle and Dan Build Notes"
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on http://clasweb.jlab.org/wiki/index.php/UNH_Sim12_Setup. In the second to last dashed-line box, it says $XERCESROOT rather than $XERCES<u>C</u>ROOT | on http://clasweb.jlab.org/wiki/index.php/UNH_Sim12_Setup. In the second to last dashed-line box, it says $XERCESROOT rather than $XERCES<u>C</u>ROOT | ||
− | + | ==Nuances== | |
− | + | ||
− | + | Never '''ever''' use ~ in paths. Use absolute paths to be sure. | |
− | + | ||
− | + | ==Sim12 Notes== | |
− | + | ||
− | + | Could use a redraw button, or redraw on window focus. | |
+ | Keyboard shortcuts for rotation, zoom | ||
+ | Batch mode run entirely from terminal or output displayed in same window as commands | ||
+ | |||
+ | Currently exploring sim 12 batch mode | ||
+ | drawing volumes and firing the beam | ||
+ | |||
+ | looking into xml setup for building the detector description. | ||
+ | |||
+ | |||
=<font color="#660000">Kyle's Build Notes</font>= | =<font color="#660000">Kyle's Build Notes</font>= | ||
Line 37: | Line 46: | ||
Missing header files: | Missing header files: | ||
− | < | + | <pre> |
− | + | AbstractDOMParser.cpp:46:44: xercesc/dom/impl/DOMAttrImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:47:48: xercesc/dom/impl/DOMTypeInfoImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:50:44: xercesc/dom/impl/DOMTextImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:51:48: xercesc/dom/impl/DOMDocumentImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:52:52: xercesc/dom/impl/DOMDocumentTypeImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:54:49: xercesc/dom/impl/DOMElementNSImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:55:46: xercesc/dom/impl/DOMEntityImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:56:55: xercesc/dom/impl/DOMEntityReferenceImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:57:48: xercesc/dom/impl/DOMNotationImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:60:61: xercesc/dom/impl/DOMProcessingInstructionImpl.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:61:45: xercesc/dom/impl/DOMNodeIDMap.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp:62:41: xercesc/dom/impl/DOMCasts.hpp: No such file or directory | |
− | + | AbstractDOMParser.cpp: In member function `void xercesc_2_8::AbstractDOMParser::cleanUp()': | |
− | </ | + | </pre> |
− | + | need to export XERCESCROOT="/net/home/kyle/CLAS12/Sim12/XERCESC/xerces-c-src_2_8_0", my install directory. | |
− | |||
− | |||
− | |||
#./runConfigure -plinux -cgcc -xg++ - good | #./runConfigure -plinux -cgcc -xg++ - good | ||
Line 62: | Line 68: | ||
− | |||
===DAWN=== | ===DAWN=== | ||
Line 78: | Line 83: | ||
make script failing | make script failing | ||
+ | |||
+ | using absolute path rather than path from ~, makefile doesn't read relative paths correctly. | ||
+ | |||
+ | eg: | ||
+ | <pre> | ||
+ | CLHEPROOT=/net/home/kyle/CLAS12/Sim12/CLHEP | ||
+ | CLHEP_BASE_DIR=/net/home/kyle/CLAS12/Sim12/CLHEP | ||
+ | XERCESCROOT=/net/home/kyle/CLAS12/Sim12/XERCESC | ||
+ | G4WORKDIR=/net/home/kyle/CLAS12/Sim12/workDIR | ||
+ | CLHEP_LIB=/net/home/kyle/CLAS12/Sim12/CLHEP/lib | ||
+ | </pre> | ||
creating working directory: | creating working directory: | ||
*export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/workDIR" | *export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/workDIR" | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
Line 110: | Line 117: | ||
#make - good! | #make - good! | ||
#export HDDSROOT="/net/home/kyle/CLAS12/Sim12/HDDS" | #export HDDSROOT="/net/home/kyle/CLAS12/Sim12/HDDS" | ||
+ | |||
===JGEANT4=== | ===JGEANT4=== | ||
Line 122: | Line 130: | ||
===Sim12=== | ===Sim12=== | ||
Enviroment variables: | Enviroment variables: | ||
− | < | + | <pre> |
− | + | [kyle@parity JGeant4]$ echo $XERCESCROOT | |
− | + | /net/home/kyle/CLAS12/Sim12/XERCESC | |
− | + | [kyle@parity JGeant4]$ echo $CLHEPROOT | |
− | + | /net/home/kyle/CLAS12/Sim12/CLHEP | |
− | + | [kyle@parity JGeant4]$ echo $EVIOROOT | |
− | + | /net/home/kyle/CLAS12/Sim12/evio | |
− | + | [kyle@parity JGeant4]$ echo $HDDSROOT | |
− | + | /net/home/kyle/CLAS12/Sim12/HDDS | |
− | + | [kyle@parity JGeant4]$ echo $JGEANT4ROOT | |
− | + | /net/home/kyle/CLAS12/Sim12/JGeant4 | |
− | + | [kyle@parity JGeant4]$ echo $G4WORKDIR | |
− | + | /net/home/kyle/CLAS12/Sim12/workDIR | |
− | </ | + | </pre> |
make - compile time error | make - compile time error | ||
+ | <pre> | ||
Compiling Sim12.cc ... | Compiling Sim12.cc ... | ||
− | + | Sim12.cc:75: error: expected class-name before '{' token | |
− | + | Sim12.cc: In constructor `MySession::MySession(int, char**)': | |
− | + | Sim12.cc:111: error: class `MySession' does not have any field named `G4UIXm' | |
− | + | Sim12.cc: In function `int main(int, char**)': | |
− | + | Sim12.cc:238: error: cannot convert `G4UIterminal*' to `MySession*' in assignment | |
− | + | Sim12.cc:290: error: 'class MySession' has no member named 'SessionStart' | |
− | + | /net/home/kyle/CLAS12/Sim12/CLHEP/include/CLHEP/Random/Randomize.h: At global scope: | |
− | + | /net/home/kyle/CLAS12/Sim12/CLHEP/include/CLHEP/Random/Randomize.h:67: warning: 'CLHEP::HepRandomGenActiv e' defined but not used | |
− | + | make: *** | |
− | + | [/net/home/kyle/CLAS12/Sim12/workDIR/tmp/Linux-g++/Sim12/exe/Sim12.o] | |
− | + | Error 1 | |
− | + | </pre> | |
− | </ | ||
'''solution: env.sh was NOT setting variables. Recompiled geant4 and edited env.sh as needed''' | '''solution: env.sh was NOT setting variables. Recompiled geant4 and edited env.sh as needed''' | ||
Line 158: | Line 166: | ||
linking error: | linking error: | ||
− | + | <pre> | |
− | + | Compiling Sim12.cc ... | |
− | + | Using granular libraries ... | |
− | + | Linking Sim12 ... | |
− | + | /usr/bin/ld: cannot find -l/net/home/kyle/CLAS12/Sim12/CLHEP/lib | |
− | + | collect2: ld returned 1 exit status | |
+ | make: *** [/net/home/kyle/CLAS12/Sim12/workDIR/bin/Linux-g++/Sim12] Error 1 | ||
+ | </pre> | ||
− | From make -n, our error is the the second to last thing linked by ld. The directory is in | + | From make -n, our error is the the second to last thing linked by ld. The directory is in ld's path (LD_LIBRARY_PATH). Hmmmm... |
'''solution: make was treating the variable CLHEP_LIB as an archive, but it is a directory. export CLHEP_LIB="CLHEP"''' | '''solution: make was treating the variable CLHEP_LIB as an archive, but it is a directory. export CLHEP_LIB="CLHEP"''' | ||
Line 173: | Line 183: | ||
... | ... | ||
− | ====Steps to make Sim12:==== | + | ====Steps to make and run Sim12:==== |
+ | |||
+ | =====Making===== | ||
+ | |||
Setting variables: | Setting variables: | ||
Line 179: | Line 192: | ||
I needed to tag this to the end of env.sh | I needed to tag this to the end of env.sh | ||
− | < | + | <pre> |
− | + | export CLHEP_BASE_DIR="/net/home/kyle/CLAS12/Sim12/CLHEP" | |
− | + | export CLHEPROOT="/net/home/kyle/CLAS12/Sim12/CLHEP" | |
− | + | export CLHEP_LIB="CLHEP" | |
− | + | export CLHEP_LIB_DIR="/net/home/kyle/CLAS12/Sim12/CLHEP/lib" | |
− | + | env | grep CLHEP | |
− | + | export XERCESCROOT="/net/home/kyle/CLAS12/Sim12/XERCESC/xerces-c-src_2_8_0" | |
− | + | export EVIOROOT="/net/home/kyle/CLAS12/Sim12/evio" | |
− | + | export HDDSROOT="/net/home/kyle/CLAS12/Sim12/HDDS" | |
− | + | export JGEANT4ROOT="/net/home/kyle/CLAS12/Sim12/JGeant4" | |
− | + | env | grep ROOT | |
− | + | export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/workDIR" | |
− | + | export G4INSTALL="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01" | |
− | + | export G4INCLUDE="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01/include" | |
− | + | export G4LIB="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01/lib" | |
− | </ | + | </pre> |
+ | |||
− | + | #Set env variables with env.sh: 'source ...../env.sh' | |
+ | #cd to Sim12 directory, make | ||
Success! | Success! | ||
− | |||
− | |||
− | = | + | =====Running===== |
+ | |||
+ | Make sure LD_LIBRARY_PATH is up to date. | ||
+ | <pre> | ||
+ | export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$G4LIB/$G4SYSTEM:$CLHEP_LIB_DIR:$HDDSROOT/tmp/$G4SYSTEM/hdds:$JGEANT4ROOT/tmp/$G4SYSTEM/JGeant4:$XERCESROOT/lib:$EVIOROOT" | ||
+ | </pre> | ||
+ | |||
+ | My whole path: | ||
+ | <pre> | ||
+ | LD_LIBRARY_PATH=/net/home/kyle/CLAS12/Sim12/GEANT4/lib/geant4/Linux-g++:/net/home/kyle/CLAS12/Sim12/CLHEP/lib: | ||
+ | /net/home/kyle/CLAS12/Sim12/geant4.9.0.p01/lib/Linux-g++:/net/home/kyle/CLAS12/Sim12/CLHEP/lib: | ||
+ | /net/home/kyle/CLAS12/Sim12/HDDS/tmp/Linux-g++/hdds:/net/home/kyle/CLAS12/Sim12/JGeant4/tmp/Linux-g++/JGeant4: | ||
+ | /lib:/net/home/kyle/CLAS12/Sim12/evio:/net/home/kyle/CLAS12/Sim12/XERCESC/xerces-c-src_2_8_0/lib | ||
+ | </pre> | ||
+ | |||
+ | |||
+ | You want to be in the directory with clas12.xml...your Sim12 directory. IE on my station it's in /net/home/kyle/CLAS12/Sim12/Sim12 | ||
+ | |||
− | + | Now simply run $G4WORKDIR/bin/Linux-g++/Sim12 | |
− | |||
− | |||
+ | Now your sciencing!!! | ||
+ | ---- | ||
− | The Official Sim12 Offsite wiki has you leaving stuff where you compile it | + | =Daniel's Build Notes= |
+ | |||
+ | The Official Sim12 Offsite wiki has you leaving stuff where you compile it, while some of the directions assume that you do not. This is extremely confusing. Because many of the packages need the source of the others laying around, I will simply try to make things as | ||
+ | orderly as possible, with every major package in its own subdirectory under ~/Sim12. This leads to a few purely cosmetic steps in my | ||
+ | directions. | ||
==NOTE: DO NOT USE PATH NAMES WITH ~ for HOME DIRECTORY! USE ABSOLUTE PATHS!== | ==NOTE: DO NOT USE PATH NAMES WITH ~ for HOME DIRECTORY! USE ABSOLUTE PATHS!== | ||
− | + | Replace any mentions of "/Users/daniel" with whatever path you want your Sim12 directory to sit in. | |
+ | I have not used a shortcut like "~" because then people will copy-and-paste it, and it will cause | ||
+ | problems. | ||
====Preliminaries:==== | ====Preliminaries:==== | ||
− | + | <pre> | |
− | + | mkdir -p /Users/daniel/Sim12 | |
+ | mkdir -p /Users/daniel/Sim12/source | ||
+ | </pre> | ||
===CLHEP=== | ===CLHEP=== | ||
− | + | <pre> | |
− | + | cd /Users/daniel/Sim12/source | |
− | + | wget http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/distributions/clhep-2.0.3.2-src.tgz | |
− | + | cd /Users/daniel/Sim12 | |
− | + | tar -zxvf /Users/daniel/Sim12/source/clhep-2.0.3.2.tgz | |
− | + | mv 2.0.3.2/CLHEP ./ | |
− | + | rmdir 2.0.3.2 | |
− | + | cd CLHEP | |
− | + | ./configure --prefix=/Users/daniel/Sim12/CLHEP | |
+ | make | ||
+ | make install | ||
+ | export CLHEPROOT="/Users/daniel/Sim12/CLHEP" | ||
+ | </pre> | ||
===XERCESC=== | ===XERCESC=== | ||
− | + | <pre> | |
− | + | cd /Users/daniel/Sim12 | |
− | + | tar -zxvf /Users/daniel/Sim12/source/xerces-c-src_2_8_0.tar.gz | |
− | + | mv xerces-c-src_2_8_0 XERCESC | |
− | + | cd XERCESC/src/xercesc | |
− | + | export XERCESCROOT="/Users/daniel/Sim12/XERCESC" | |
− | + | ./runConfigure -p linux -c gcc -x g++ # on a Mac, "./runConfigure -p macosx -c gcc -x g++" | |
− | + | make | |
− | + | </pre> | |
− | + | ====Building XERCESC fails if using ~/blah for XERCESCROOT!==== | |
− | ====Building XERCESC fails if using ~/blah for | ||
− | |||
===DAWN=== | ===DAWN=== | ||
− | + | <pre> | |
− | + | cd /Users/daniel/Sim12 | |
− | + | tar -zxvf /Users/daniel/Sim12/source/dawn_3_88a.taz | |
− | + | mv dawn_3_88a DAWN | |
− | + | cd DAWN | |
− | + | make | |
− | + | </pre> | |
− | |||
===GEANT4=== | ===GEANT4=== | ||
+ | <pre> | ||
+ | cd /Users/daniel/Sim12 | ||
+ | tar -zxvf /Users/daniel/Sim12/source/geant4.9.0.p01.gtar.gz | ||
+ | mv geant4.9.0.p01 GEANT4 | ||
+ | cd GEANT4 | ||
+ | mkdir data | ||
+ | cd data | ||
+ | tar -zxvf /Users/daniel/Sim12/source/G4EMLOW.4.3.tar.gz | ||
+ | tar -zxvf /Users/daniel/Sim12/source/G4NDL.3.11.tar.gz | ||
+ | tar -zxvf /Users/daniel/Sim12/source/G4RadioactiveDecay.3.2.tar.gz | ||
+ | tar -zxvf /Users/daniel/Sim12/source/PhotonEvaporation.2.0.tar.gz | ||
+ | cd .. | ||
+ | ./Configure -build | ||
+ | </pre> | ||
− | + | Here is most of the output of the script, with my answers. | |
− | |||
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− | |||
− | |||
− | |||
− | |||
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− | ==GEANT4 Questions:== | + | <pre> |
+ | ====GEANT4 Questions:==== | ||
Definition of G4SYSTEM variable is Linux-g++. | Definition of G4SYSTEM variable is Linux-g++. | ||
That stands for: | That stands for: | ||
Line 385: | Line 426: | ||
You have selected to use the XM Motif based user interfaces. | You have selected to use the XM Motif based user interfaces. | ||
Specify the correct path where Xm is installed in your system. | Specify the correct path where Xm is installed in your system. | ||
− | It was found in / | + | It was found in /sw. Press [Enter] to set this path or type the correct one. |
You can set '-' (without quotation) to CANCEL the XM flag at all: | You can set '-' (without quotation) to CANCEL the XM flag at all: | ||
− | [/ | + | [/sw] |
G4VIS_NONE | G4VIS_NONE | ||
Line 480: | Line 521: | ||
[n] | [n] | ||
− | End of configuration phase. | + | End of configuration phase. |
+ | </pre> | ||
− | + | Now if you hit ENTER it should go off and compile for a long time. Get a coffee. And a pizza. | |
− | === | + | <pre> |
+ | source /Users/daniel/Sim12/GEANT4/.config/bin/Linux-g++/env.sh # >> For Linux users | ||
+ | source /Users/daniel/Sim12/GEANT4/.config/bin/Darwin-g++/env.sh #>> For MacOS X users | ||
+ | cp /Users/daniel/Sim12/GEANT4/.config/bin/Darwin-g++/env.sh /Users/daniel/Sim12/env.sh | ||
+ | mkdir /Users/daniel/Sim12/workDir | ||
+ | export G4WORKDIR="/Users/daniel/Sim12/workDir" | ||
+ | cd source/physics_lists | ||
+ | make | ||
+ | </pre> | ||
+ | |||
+ | ===EVIO=== | ||
+ | I had to install expat in MacOSX before I could compile | ||
+ | |||
+ | <pre> | ||
+ | cd /Users/daniel/Sim12 | ||
+ | tar -zxvf /Users/daniel/Sim12/source/evio-2.0-source.tar.gz | ||
+ | mv evio EVIO | ||
+ | cd EVIO | ||
+ | make | ||
+ | export EVIOROOT="/Users/daniel/Sim12/EVIO" | ||
+ | </pre> | ||
+ | |||
+ | ===HDDS=== | ||
+ | <pre> | ||
+ | cd /Users/daniel/Sim12 | ||
+ | svn checkout https://phys12svn.jlab.org/repos/trunk/src/HDDS | ||
+ | cd HDDS | ||
+ | export G4WORKDIR=`pwd` | ||
+ | make | ||
+ | export HDDSROOT="/Users/daniel/Sim12/HDDS" | ||
+ | </pre> | ||
− | < | + | ===JGeant4=== |
− | + | <pre> | |
− | + | cd /Users/daniel/Sim12 | |
− | + | svn checkout https://phys12svn.jlab.org/repos/trunk/src/JGeant4/ | |
− | + | mv JGeant4 JGEANT4 # Just for consistency | |
− | + | cd JGEANT4 | |
− | + | export G4WORKDIR=`pwd` | |
− | + | make | |
− | + | export JGEANT4ROOT="/Users/daniel/Sim12/JGEANT4" | |
− | + | </pre> | |
− | |||
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− | / | ||
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− | |||
− | < | + | ===Sim12=== |
+ | <pre> | ||
+ | export G4WORKDIR="/Users/daniel/Sim12/workDir" | ||
+ | export HDDSROOT="/Users/daniel/Sim12/HDDS" | ||
+ | export EVIOROOT="/Users/daniel/Sim12/EVIO" | ||
+ | export CLHEPROOT="/Users/daniel/Sim12/CLHEP" | ||
+ | export XERCESCROOT="/Users/daniel/Sim12/XERCESC" | ||
+ | cd /Users/daniel/Sim12 | ||
+ | tar -jxvf source/Sim12.tar.bz2 | ||
+ | cd /Users/daniel/Sim12/Sim12 | ||
+ | make clean | ||
+ | make | ||
+ | </pre> |
Latest revision as of 22:28, 28 October 2007
Note: It's ugly. New to editing wikis.
Kyle's Generic Notes
Typos
on http://clasweb.jlab.org/wiki/index.php/UNH_Sim12_Setup. In the second to last dashed-line box, it says $XERCESROOT rather than $XERCESCROOT
Nuances
Never ever use ~ in paths. Use absolute paths to be sure.
Sim12 Notes
Could use a redraw button, or redraw on window focus. Keyboard shortcuts for rotation, zoom Batch mode run entirely from terminal or output displayed in same window as commands
Currently exploring sim 12 batch mode drawing volumes and firing the beam
looking into xml setup for building the detector description.
Kyle's Build Notes
CLHEP SETUP
- Download CLHEP - good (http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/distributions/clhep-2.0.3.1.tgz)
- tar -xzvf clhep-2.0.3.1.tgz - good
- changed wd to ~/CLAS12/Sim12/CLHEP/2.0.3.1/CLHEP
- ./configure --prefix=/net/home/kyle/Sim12/CLHEP - good
- make (CLHEP) - good
- make install (CLHEP) - good
- export CLHEPROOT="/net/home/kyle/CLAS12/Sim12/CLHEP" - good
XERCES-C SETUP
- Download XERCES-C - good (http://apache.mirror99.com/xerces/c/sources/xerces-c-src_2_8_0.tar.gz)
- tar -xzvf xerces-c-src_2_8_0.tar.gz - good
- export XERCESCROOT="/net/home/kyle/CLAS12/Sim12/XERCESC" - good
- cd to (XERCESCROOT)/xerces-c-src_2_8_0.tar.gz/src/xercesc
- ./runConfigure -plinux -cgcc -xg++ - good
- make (.../xercesc) - failed compiletime for Abstract DOMParser.o, several errors.
Missing header files:
AbstractDOMParser.cpp:46:44: xercesc/dom/impl/DOMAttrImpl.hpp: No such file or directory AbstractDOMParser.cpp:47:48: xercesc/dom/impl/DOMTypeInfoImpl.hpp: No such file or directory AbstractDOMParser.cpp:50:44: xercesc/dom/impl/DOMTextImpl.hpp: No such file or directory AbstractDOMParser.cpp:51:48: xercesc/dom/impl/DOMDocumentImpl.hpp: No such file or directory AbstractDOMParser.cpp:52:52: xercesc/dom/impl/DOMDocumentTypeImpl.hpp: No such file or directory AbstractDOMParser.cpp:54:49: xercesc/dom/impl/DOMElementNSImpl.hpp: No such file or directory AbstractDOMParser.cpp:55:46: xercesc/dom/impl/DOMEntityImpl.hpp: No such file or directory AbstractDOMParser.cpp:56:55: xercesc/dom/impl/DOMEntityReferenceImpl.hpp: No such file or directory AbstractDOMParser.cpp:57:48: xercesc/dom/impl/DOMNotationImpl.hpp: No such file or directory AbstractDOMParser.cpp:60:61: xercesc/dom/impl/DOMProcessingInstructionImpl.hpp: No such file or directory AbstractDOMParser.cpp:61:45: xercesc/dom/impl/DOMNodeIDMap.hpp: No such file or directory AbstractDOMParser.cpp:62:41: xercesc/dom/impl/DOMCasts.hpp: No such file or directory AbstractDOMParser.cpp: In member function `void xercesc_2_8::AbstractDOMParser::cleanUp()':
need to export XERCESCROOT="/net/home/kyle/CLAS12/Sim12/XERCESC/xerces-c-src_2_8_0", my install directory.
- ./runConfigure -plinux -cgcc -xg++ - good
- make - good
DAWN
- Downloaded and extracted dawn into a directory. (http://geant4.kek.jp/%7Etanaka/DAWN/About_DAWN.html)
- make - good
GEANT4
- Downloaded and extracted geant4 and data files
- compiled geant4 - no problem
- make physics_list stuff...
had to assign many enviroment variables
make script failing
using absolute path rather than path from ~, makefile doesn't read relative paths correctly.
eg:
CLHEPROOT=/net/home/kyle/CLAS12/Sim12/CLHEP CLHEP_BASE_DIR=/net/home/kyle/CLAS12/Sim12/CLHEP XERCESCROOT=/net/home/kyle/CLAS12/Sim12/XERCESC G4WORKDIR=/net/home/kyle/CLAS12/Sim12/workDIR CLHEP_LIB=/net/home/kyle/CLAS12/Sim12/CLHEP/lib
creating working directory:
- export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/workDIR"
Evio
Download site no longer active
- cp from /net/data/taro/maurik/evio
- make clean
- make - good
- export EVIOROOT="/net/home/kyle/CLAS12/Sim12/evio"
HDDS
- cp maurik's HDDS files from /net/data/taro/maurik/HDDS
needs G4INSTALL defined
- export G4INSTALL="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01"
- make clean
- make - good!
- export HDDSROOT="/net/home/kyle/CLAS12/Sim12/HDDS"
JGEANT4
- cd to Sim12 directory
- svn checkout https://phys12svn.jlab.org/repos/trunk/src/JGeant4/
- export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/JGeant4"
- make - good!
- export JGEANT4ROOT="/net/home/kyle/CLAS12/Sim12/JGeant4"
- export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/workDIR"
Sim12
Enviroment variables:
[kyle@parity JGeant4]$ echo $XERCESCROOT /net/home/kyle/CLAS12/Sim12/XERCESC [kyle@parity JGeant4]$ echo $CLHEPROOT /net/home/kyle/CLAS12/Sim12/CLHEP [kyle@parity JGeant4]$ echo $EVIOROOT /net/home/kyle/CLAS12/Sim12/evio [kyle@parity JGeant4]$ echo $HDDSROOT /net/home/kyle/CLAS12/Sim12/HDDS [kyle@parity JGeant4]$ echo $JGEANT4ROOT /net/home/kyle/CLAS12/Sim12/JGeant4 [kyle@parity JGeant4]$ echo $G4WORKDIR /net/home/kyle/CLAS12/Sim12/workDIR
make - compile time error
Compiling Sim12.cc ... Sim12.cc:75: error: expected class-name before '{' token Sim12.cc: In constructor `MySession::MySession(int, char**)': Sim12.cc:111: error: class `MySession' does not have any field named `G4UIXm' Sim12.cc: In function `int main(int, char**)': Sim12.cc:238: error: cannot convert `G4UIterminal*' to `MySession*' in assignment Sim12.cc:290: error: 'class MySession' has no member named 'SessionStart' /net/home/kyle/CLAS12/Sim12/CLHEP/include/CLHEP/Random/Randomize.h: At global scope: /net/home/kyle/CLAS12/Sim12/CLHEP/include/CLHEP/Random/Randomize.h:67: warning: 'CLHEP::HepRandomGenActiv e' defined but not used make: *** [/net/home/kyle/CLAS12/Sim12/workDIR/tmp/Linux-g++/Sim12/exe/Sim12.o] Error 1
solution: env.sh was NOT setting variables. Recompiled geant4 and edited env.sh as needed
linking error:
Compiling Sim12.cc ... Using granular libraries ... Linking Sim12 ... /usr/bin/ld: cannot find -l/net/home/kyle/CLAS12/Sim12/CLHEP/lib collect2: ld returned 1 exit status make: *** [/net/home/kyle/CLAS12/Sim12/workDIR/bin/Linux-g++/Sim12] Error 1
From make -n, our error is the the second to last thing linked by ld. The directory is in ld's path (LD_LIBRARY_PATH). Hmmmm...
solution: make was treating the variable CLHEP_LIB as an archive, but it is a directory. export CLHEP_LIB="CLHEP"
make...success!
...
Steps to make and run Sim12:
Making
Setting variables:
Not all directories will be correct in env.sh. Make sure G4 variable directories are pointing in the right place.
I needed to tag this to the end of env.sh
export CLHEP_BASE_DIR="/net/home/kyle/CLAS12/Sim12/CLHEP" export CLHEPROOT="/net/home/kyle/CLAS12/Sim12/CLHEP" export CLHEP_LIB="CLHEP" export CLHEP_LIB_DIR="/net/home/kyle/CLAS12/Sim12/CLHEP/lib" env | grep CLHEP export XERCESCROOT="/net/home/kyle/CLAS12/Sim12/XERCESC/xerces-c-src_2_8_0" export EVIOROOT="/net/home/kyle/CLAS12/Sim12/evio" export HDDSROOT="/net/home/kyle/CLAS12/Sim12/HDDS" export JGEANT4ROOT="/net/home/kyle/CLAS12/Sim12/JGeant4" env | grep ROOT export G4WORKDIR="/net/home/kyle/CLAS12/Sim12/workDIR" export G4INSTALL="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01" export G4INCLUDE="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01/include" export G4LIB="/net/home/kyle/CLAS12/Sim12/geant4.9.0.p01/lib"
- Set env variables with env.sh: 'source ...../env.sh'
- cd to Sim12 directory, make
Success!
Running
Make sure LD_LIBRARY_PATH is up to date.
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$G4LIB/$G4SYSTEM:$CLHEP_LIB_DIR:$HDDSROOT/tmp/$G4SYSTEM/hdds:$JGEANT4ROOT/tmp/$G4SYSTEM/JGeant4:$XERCESROOT/lib:$EVIOROOT"
My whole path:
LD_LIBRARY_PATH=/net/home/kyle/CLAS12/Sim12/GEANT4/lib/geant4/Linux-g++:/net/home/kyle/CLAS12/Sim12/CLHEP/lib: /net/home/kyle/CLAS12/Sim12/geant4.9.0.p01/lib/Linux-g++:/net/home/kyle/CLAS12/Sim12/CLHEP/lib: /net/home/kyle/CLAS12/Sim12/HDDS/tmp/Linux-g++/hdds:/net/home/kyle/CLAS12/Sim12/JGeant4/tmp/Linux-g++/JGeant4: /lib:/net/home/kyle/CLAS12/Sim12/evio:/net/home/kyle/CLAS12/Sim12/XERCESC/xerces-c-src_2_8_0/lib
You want to be in the directory with clas12.xml...your Sim12 directory. IE on my station it's in /net/home/kyle/CLAS12/Sim12/Sim12
Now simply run $G4WORKDIR/bin/Linux-g++/Sim12
Now your sciencing!!!
Daniel's Build Notes
The Official Sim12 Offsite wiki has you leaving stuff where you compile it, while some of the directions assume that you do not. This is extremely confusing. Because many of the packages need the source of the others laying around, I will simply try to make things as orderly as possible, with every major package in its own subdirectory under ~/Sim12. This leads to a few purely cosmetic steps in my directions.
NOTE: DO NOT USE PATH NAMES WITH ~ for HOME DIRECTORY! USE ABSOLUTE PATHS!
Replace any mentions of "/Users/daniel" with whatever path you want your Sim12 directory to sit in. I have not used a shortcut like "~" because then people will copy-and-paste it, and it will cause problems.
Preliminaries:
mkdir -p /Users/daniel/Sim12 mkdir -p /Users/daniel/Sim12/source
CLHEP
cd /Users/daniel/Sim12/source wget http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/distributions/clhep-2.0.3.2-src.tgz cd /Users/daniel/Sim12 tar -zxvf /Users/daniel/Sim12/source/clhep-2.0.3.2.tgz mv 2.0.3.2/CLHEP ./ rmdir 2.0.3.2 cd CLHEP ./configure --prefix=/Users/daniel/Sim12/CLHEP make make install export CLHEPROOT="/Users/daniel/Sim12/CLHEP"
XERCESC
cd /Users/daniel/Sim12 tar -zxvf /Users/daniel/Sim12/source/xerces-c-src_2_8_0.tar.gz mv xerces-c-src_2_8_0 XERCESC cd XERCESC/src/xercesc export XERCESCROOT="/Users/daniel/Sim12/XERCESC" ./runConfigure -p linux -c gcc -x g++ # on a Mac, "./runConfigure -p macosx -c gcc -x g++" make
Building XERCESC fails if using ~/blah for XERCESCROOT!
DAWN
cd /Users/daniel/Sim12 tar -zxvf /Users/daniel/Sim12/source/dawn_3_88a.taz mv dawn_3_88a DAWN cd DAWN make
GEANT4
cd /Users/daniel/Sim12 tar -zxvf /Users/daniel/Sim12/source/geant4.9.0.p01.gtar.gz mv geant4.9.0.p01 GEANT4 cd GEANT4 mkdir data cd data tar -zxvf /Users/daniel/Sim12/source/G4EMLOW.4.3.tar.gz tar -zxvf /Users/daniel/Sim12/source/G4NDL.3.11.tar.gz tar -zxvf /Users/daniel/Sim12/source/G4RadioactiveDecay.3.2.tar.gz tar -zxvf /Users/daniel/Sim12/source/PhotonEvaporation.2.0.tar.gz cd .. ./Configure -build
Here is most of the output of the script, with my answers.
====GEANT4 Questions:==== Definition of G4SYSTEM variable is Linux-g++. That stands for: 1) OS : Linux 2) Compiler : g++ To modify default settings, select number above (e.g. 2) [Press [Enter] for default settings] I can set things up so that your shell scripts and binaries are more portable, at what may be a noticable cost in performance. In particular, if you ask to be portable, the following happens: 1) Shell scripts will rely on the PATH variable rather than using the paths derived above. 2) ~username interpretations will be done at run time rather than by Configure. Do you expect to run these scripts and binaries on multiple machines? [n] y Where is Geant4 source installed? [/net/home/dan/Sim12/GEANT4] Specify the path where Geant4 libraries and source files should be installed. [/net/home/dan/Sim12/GEANT4] Do you want to copy all Geant4 headers in one directory? [n] y Please, specify default directory where ALL the Geant4 data is installed: G4LEVELGAMMADATA: /net/home/dan/Sim12/GEANT4/data/PhotonEvaporation2.0 G4RADIOACTIVEDATA: /net/home/dan/Sim12/GEANT4/data/RadioactiveDecay3.2 G4LEDATA: /net/home/dan/Sim12/GEANT4/data/G4EMLOW4.3 G4NEUTRONHPDATA: /net/home/dan/Sim12/GEANT4/data/G4NDL3.11 You will be asked about customizing these next. [/net/home/dan/Sim12/GEANT4/data] Please, specify default directory where the Geant4 data is installed: 1) G4LEVELGAMMADATA: /net/home/dan/Sim12/GEANT4/data/PhotonEvaporation2.0 2) G4RADIOACTIVEDATA: /net/home/dan/Sim12/GEANT4/data/RadioactiveDecay3.2 3) G4LEDATA: /net/home/dan/Sim12/GEANT4/data/G4EMLOW4.3 4) G4NEUTRONHPDATA: /net/home/dan/Sim12/GEANT4/data/G4NDL3.11 To modify default settings, select number above (e.g. 2) [Press [Enter] for default settings] Could not find CLHEP installed on this system! Please, specify where CLHEP is installed: CLHEP_BASE_DIR: /net/home/dan/Sim12/CLHEP You can customize paths and library name of you CLHEP installation: 1) CLHEP_INCLUDE_DIR: /net/home/dan/Sim12/CLHEP/include 2) CLHEP_LIB_DIR: /net/home/dan/Sim12/CLHEP/lib 3) CLHEP_LIB: CLHEP To modify default settings, select number above (e.g. 2) [Press [Enter] for default settings] By default 'static' (.a) libraries are built. Do you want to build 'shared' (.so) libraries? [n] y You selected to build 'shared' (.so) libraries. Do you want to build 'static' (.a) libraries too? [n] y Do you want to build 'global' compound libraries? [n] n Do you want to compile libraries in DEBUG mode (-g)? [n] n G4UI_NONE If this variable is set, no UI sessions nor any UI libraries are built. This can be useful when running a pure batch job or in a user framework having its own UI system. Do you want to set this variable ? [n] G4UI_BUILD_XAW_SESSION G4UI_USE_XAW Specifies to include and use the XAW interfaces in the application to be built. The XAW (X11 Athena Widget set) extensions are required to activate and build this driver. [n] y You have selected to use the XAW based user interfaces. Specify the correct path where XAW is installed in your system. It was found in /usr/X11R6. Press [Enter] to set this path or type the correct one. You can set '-' (without quotation) to CANCEL the XAW flag at all: [/usr/X11R6] G4UI_BUILD_XM_SESSION G4UI_USE_XM Specifies to include and use the XM Motif based user interfaces. The XM Motif extensions are required to activate and build this driver. [n] y You have selected to use the XM Motif based user interfaces. Specify the correct path where Xm is installed in your system. It was found in /sw. Press [Enter] to set this path or type the correct one. You can set '-' (without quotation) to CANCEL the XM flag at all: [/sw] G4VIS_NONE If this variable is set, no visualization drivers will be built or used. Do you want to set this variable ? [n] G4VIS_BUILD_OPENGLX_DRIVER G4VIS_USE_OPENGLX It is an interface to the de facto standard 3D graphics library, OpenGL. It is well suited for real-time fast visualization and prototyping. The X11 version of the OpenGL libraries is required. [n] y G4VIS_BUILD_OPENGLXM_DRIVER G4VIS_USE_OPENGLXM It is an interface to the de facto standard 3D graphics library, OpenGL. It is well suited for real-time fast visualization and prototyping. The X11 version of the OpenGL libraries and the Motif Xm extension is required. [n] y G4VIS_BUILD_DAWN_DRIVER G4VIS_USE_DAWN DAWN drivers are interfaces to the Fukui Renderer DAWN. DAWN is a vectorized 3D PostScript processor suited to prepare technical high quality outputs for presentation and/or documentation. [n] y G4VIS_BUILD_OIX_DRIVER G4VIS_USE_OIX The OpenInventor driver is based on OpenInventor technology for scientific visualization. The X11 version of OpenInventor is required. [n] n G4VIS_BUILD_RAYTRACERX_DRIVER G4VIS_USE_RAYTRACERX Allows for interactive ray-tracing graphics through X11. The X11 package is required. [n] y G4VIS_BUILD_VRML_DRIVER G4VIS_USE_VRML These driver generate VRML files, which describe 3D scenes to be visualized with a proper VRML viewer. [n] y OGLHOME/include OGLHOME/lib You have selected to use OpenGL driver. Specify the correct path (OGLHOME) where OpenGL is installed in your system. It was found in /usr. Press [Enter] to set this path or type the correct one. You can set '-' (without quotation) to CANCEL the OpenGL flag at all: [/usr] G4LIB_BUILD_G3TOG4 The utility module 'g3tog4' will be built by setting this variable. NOTE: it requires a valid FORTRAN compiler to be installed on your system and the 'cernlib' command in the path, in order to build the ancillary tools! Do you want to build 'g3tog4' ? [n] y G4LIB_BUILD_ZLIB Do you want to activate compression for output files generated by the HepRep visualization driver? [n] y G4ANALYSIS_USE Activates the configuration setup for allowing plugins to analysis tools based on AIDA (Astract Interfaces for Data Analysis). In order to use AIDA features and compliant analysis tools, the proper environment for these tools will have to be set (see documentation for the specific analysis tools). [n] End of configuration phase.
Now if you hit ENTER it should go off and compile for a long time. Get a coffee. And a pizza.
source /Users/daniel/Sim12/GEANT4/.config/bin/Linux-g++/env.sh # >> For Linux users source /Users/daniel/Sim12/GEANT4/.config/bin/Darwin-g++/env.sh #>> For MacOS X users cp /Users/daniel/Sim12/GEANT4/.config/bin/Darwin-g++/env.sh /Users/daniel/Sim12/env.sh mkdir /Users/daniel/Sim12/workDir export G4WORKDIR="/Users/daniel/Sim12/workDir" cd source/physics_lists make
EVIO
I had to install expat in MacOSX before I could compile
cd /Users/daniel/Sim12 tar -zxvf /Users/daniel/Sim12/source/evio-2.0-source.tar.gz mv evio EVIO cd EVIO make export EVIOROOT="/Users/daniel/Sim12/EVIO"
HDDS
cd /Users/daniel/Sim12 svn checkout https://phys12svn.jlab.org/repos/trunk/src/HDDS cd HDDS export G4WORKDIR=`pwd` make export HDDSROOT="/Users/daniel/Sim12/HDDS"
JGeant4
cd /Users/daniel/Sim12 svn checkout https://phys12svn.jlab.org/repos/trunk/src/JGeant4/ mv JGeant4 JGEANT4 # Just for consistency cd JGEANT4 export G4WORKDIR=`pwd` make export JGEANT4ROOT="/Users/daniel/Sim12/JGEANT4"
Sim12
export G4WORKDIR="/Users/daniel/Sim12/workDir" export HDDSROOT="/Users/daniel/Sim12/HDDS" export EVIOROOT="/Users/daniel/Sim12/EVIO" export CLHEPROOT="/Users/daniel/Sim12/CLHEP" export XERCESCROOT="/Users/daniel/Sim12/XERCESC" cd /Users/daniel/Sim12 tar -jxvf source/Sim12.tar.bz2 cd /Users/daniel/Sim12/Sim12 make clean make